Genome alignments for data generated in the project "Whole transcriptome analysis of thousands of FACS-sorted single cells with the single cell nanoCAGE protocol – Optimization of the protocol." Files names indicate unique identifiers of MOIRAI workflow runs, with the following structure: library name, dot, workflow ID (OP-WORKFLOW-CAGEscan-short-reads-v2.0.), dot, timestamp. The raw (FASTQ) data of each library is also deposited in Zenodo (10.5281/zenodo.250156). Library names correspond to the following runs:
This data can be analysed using the "CAGEr" software package available from Bioconductor. The "multiplex_files.zip" file contains tables indicating which samples are biological replicates of each other or negative controls.